PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0432.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HD-ZIP
Protein Properties Length: 185aa    MW: 21402.3 Da    PI: 9.6291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0432.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-1972127257
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           +k+ ++t+eql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNr+a++k+
  Bostr.23794s0432.1.p  72 KKKKKMTSEQLKFLERSFQEEIKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 127
                           78999*************************************************95 PP

2HD-ZIP_I/II1118.2e-3672163192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+++++eq+k+LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e  +L++
  Bostr.23794s0432.1.p  72 KKKKKMTSEQLKFLERSFQEEIKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLERLYESLRQEFDVVSREKELLQEELIQLKS 160
                           59**************************************************************************************8 PP

           HD-ZIP_I/II  90 elk 92 
                            ++
  Bostr.23794s0432.1.p 161 MIR 163
                           876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2057130IPR009057Homeodomain-like
PROSITE profilePS5007117.36268128IPR001356Homeobox domain
SMARTSM003892.5E-1770132IPR001356Homeobox domain
PfamPF000463.2E-1672127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-2078128IPR009057Homeodomain-like
CDDcd000869.03E-1578129No hitNo description
PRINTSPR000317.6E-599108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000317.6E-5108124IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEYWSSSFID GASSSNFISS FYNFDHFPGN QDNRCLSSGT MVGAQQGMLH VPLAMVESGY  60
GEESNNLNGK QKKKKKMTSE QLKFLERSFQ EEIKLDPDRK MKLSKELGLQ PRQIAVWFQN  120
RKARWKNKQL ERLYESLRQE FDVVSREKEL LQEELIQLKS MIRENGSNTK MQTWEKACSK  180
AITG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565691e-106DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295077.11e-119hypothetical protein CARUB_v10024148mg
SwissprotQ4PSR71e-112ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLR0HRP81e-119R0HRP8_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0004_21631e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.11e-88homeobox protein 22